Colonization and branching times of terrestrial avifaunal clades from Azores, Canary Islands, Cape Verde and Madeira in list format, accepted by DAISIE_ML and DAISIE_loglik_all
Source:R/DAISIE_data.R
Macaronesia_datalist.RdA list containing the colonization and branching times of the terrestrial
avifauna in 4 archipelagos: Azores, Canary Islands, Cape Verde and Madeira.
It is an R list object with the 4 main elements corresponding to each of the
archipelagos (e.g. Macaronesia_datalist[[1]] calls the Azores data). Each of
the four elements is then made of several elemants:
The first element of the list for an archipelago has two components: $island_age - the island age $not_present - the number of
mainland lineages that are not present on the island
The following elements of the list each contains information on a single colonist lineage
on the island and has 5 components:$colonist_name - the name
of the species or clade that colonized the island $branching_times - island age followed by stem age of the population/species
in the case of Non-endemic, Non-endemic_MaxAge species and Endemic species with no close
relatives on the island. For endemic clades with more than one species on the island
(cladogenetic clades/ radiations) these should be island age followed by the
branching times of the island clade including the stem age of the clade.
* Non_endemic_MaxAge: 1
* Endemic: 2
* Endemic&Non_Endemic: 3
* Non_endemic: 4
* Endemic_MaxAge: 5 $missing_species - number of island species that were not sampled for
particular clade (only applicable for endemic clades) $type1or2 -
whether the colonist belongs to type 1 or type 2. In this dataset all are
equal to 1.
Source
Valente L., Illera J.C, Havenstein K., Pallien T., Etienne R.S., Tiedemann R. Equilibrium bird species diversity in Atlantic islands. 2017 Current Biology, 27, 1660-1666.