1000 islands in RAW format simulated with the ML parameters of the CR model for the Galapagos data.
Source:R/DAISIE_data.R
islands_10reps_RAW.RdEach simulated dataset is an element of the list, which can be called using
e.g. islands_10reps_RAW[[1]] Each of the island replicates is a list in
itself. The first (e.g. islands_10reps_RAW[[x]][[1]]) element of that list
has the following components:
The following elements of the RAW list
each contain information on a single colonist lineage on the island and has
5 components:$branching_times - island age and stem age of the
population/species in the case of Non-endemic, Non-endemic_MaxAge and
Endemic anagenetic species. For cladogenetic species these should be island
age and branching times of the radiation including the stem age of the
radiation.$stac - the status of the colonist
* Not_present: 0
* Non_endemic_MaxAge: 1
* Endemic: 2
* Endemic&Non_Endemic: 3
* Non_endemic: 4 $stt_table - Species-through-time table for
the descendants of the mainland species (nI - number of non-endemic species;
nA - number of anagenetic species, nC - number of cladogenetic species)$missing_species - number of island species that were not sampled for
particular clade (only applicable for endemic clades)
Source
Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium and non-equilibrium dynamics simultaneously operate in the Galapagos islands. Ecology Letters 18: 844-852.