Maximum likehood estimation under Several examined and concealed States-dependent Speciation and Extinction (SecSSE) with cladogenetic option
Usage
cla_secsse_ml(
phy,
traits,
num_concealed_states,
idparslist,
idparsopt,
initparsopt,
idparsfix,
parsfix,
cond = "proper_cond",
root_state_weight = "proper_weights",
sampling_fraction,
tol = c(1e-04, 1e-05, 1e-07),
maxiter = 1000 * round((1.25)^length(idparsopt)),
optimmethod = "subplex",
num_cycles = 1,
loglik_penalty = 0,
is_complete_tree = FALSE,
verbose = (optimmethod == "simplex"),
num_threads = 1,
atol = 1e-08,
rtol = 1e-07,
method = "odeint::bulirsch_stoer"
)
Arguments
- phy
phylogenetic tree of class
phylo
, rooted and with branch lengths.- traits
vector with trait states for each tip in the phylogeny. The order of the states must be the same as the tree tips. For help, see
vignette("starting_secsse", package = "secsse")
.- num_concealed_states
number of concealed states, generally equivalent to the number of examined states in the dataset.
- idparslist
overview of parameters and their values.
- idparsopt
a numeric vector with the ID of parameters to be estimated.
- initparsopt
a numeric vector with the initial guess of the parameters to be estimated.
- idparsfix
a numeric vector with the ID of the fixed parameters.
- parsfix
a numeric vector with the value of the fixed parameters.
- cond
condition on the existence of a node root:
"maddison_cond"
,"proper_cond"
(default). For details, see vignette.- root_state_weight
the method to weigh the states:
"maddison_weights"
,"proper_weights"
(default) or"equal_weights"
. It can also be specified for the root state: the vectorc(1, 0, 0)
indicates state 1 was the root state.- sampling_fraction
vector that states the sampling proportion per trait state. It must have as many elements as there are trait states.
- tol
A numeric vector with the maximum tolerance of the optimization algorithm. Default is
c(1e-04, 1e-05, 1e-05)
.- maxiter
max number of iterations. Default is
1000 * round((1.25) ^ length(idparsopt))
.- optimmethod
A string with method used for optimization. Default is
"subplex"
. Alternative is"simplex"
and it shouldn't be used in normal conditions (only for debugging). Both are called fromDDD::optimizer()
, simplex is implemented natively in DDD, while subplex is ultimately called fromsubplex::subplex()
.- num_cycles
Number of cycles of the optimization. When set to
Inf
, the optimization will be repeated until the result is, within the tolerance, equal to the starting values, with a maximum of 10 cycles.- loglik_penalty
the size of the penalty for all parameters; default is 0 (no penalty).
- is_complete_tree
logical specifying whether or not a tree with all its extinct species is provided. If set to
TRUE
, it also assumes that all all extinct lineages are present on the tree. Defaults toFALSE
.- verbose
sets verbose output; default is
TRUE
whenoptimmethod
is"simplex"
. Ifoptimmethod
is set to"simplex"
, then even if set toFALSE
, optimizer output will be shown.- num_threads
number of threads to be used. Default is one thread.
- atol
A numeric specifying the absolute tolerance of integration.
- rtol
A numeric specifying the relative tolerance of integration.
- method
integration method used, available are:
"odeint::runge_kutta_cash_karp54"
,"odeint::runge_kutta_fehlberg78"
,"odeint::runge_kutta_dopri5"
,"odeint::bulirsch_stoer"
and"odeint::runge_kutta4"
. Default method is:"odeint::bulirsch_stoer"
.
Examples
# Example of how to set the arguments for a ML search.
library(secsse)
library(DDD)
set.seed(13)
# Check the vignette for a better working exercise.
# lambdas for 0A and 1A and 2A are the same but need to be estimated
# (CTD model, see Syst Biol paper)
# mus are fixed to zero,
# the transition rates are constrained to be equal and fixed 0.01
phylotree <- ape::rcoal(31, tip.label = 1:31)
#get some traits
traits <- sample(c(0,1,2), ape::Ntip(phylotree), replace = TRUE)
num_concealed_states <- 3
idparslist <- cla_id_paramPos(traits,num_concealed_states)
idparslist$lambdas[1,] <- c(1,1,1,2,2,2,3,3,3)
idparslist[[2]][] <- 4
masterBlock <- matrix(5,ncol = 3,nrow = 3,byrow = TRUE)
diag(masterBlock) <- NA
diff.conceal <- FALSE
idparslist[[3]] <- q_doubletrans(traits,masterBlock,diff.conceal)
startingpoint <- bd_ML(brts = ape::branching.times(phylotree))
#> You are optimizing lambda0 mu0
#> You are fixing lambda1 mu1
#> Optimizing the likelihood - this may take a while.
#> The loglikelihood for the initial parameter values is -67.5669039297515.
#>
#> Maximum likelihood parameter estimates: lambda0: 15.604290, mu0: 15.874464, lambda1: 0.000000, mu1: 0.000000:
#> Maximum loglikelihood: 25.282018
intGuessLamba <- startingpoint$lambda0
intGuessMu <- startingpoint$mu0
idparsopt <- c(1,2,3)
initparsopt <- c(rep(intGuessLamba,3))
idparsfix <- c(0,4,5)
parsfix <- c(0,0,0.01)
tol <- c(1e-04, 1e-05, 1e-07)
maxiter <- 1000 * round((1.25) ^ length(idparsopt))
optimmethod <- 'subplex'
cond <- 'proper_cond'
root_state_weight <- 'proper_weights'
sampling_fraction <- c(1,1,1)
model <- cla_secsse_ml(
phylotree,
traits,
num_concealed_states,
idparslist,
idparsopt,
initparsopt,
idparsfix,
parsfix,
cond,
root_state_weight,
sampling_fraction,
tol,
maxiter,
optimmethod,
num_cycles = 1,
num_threads = 1,
verbose = FALSE)
#> Warning: Note: you set some transitions as impossible to happen.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
#> Deduced names and order of used states to be: 0, 1, 2
#> if this is incorrect, consider passing states as matching numeric
#> ordering, e.g. 1 for the first state, 2 for the second etc.
# [1] -90.97626