Package index • DAMOCLES

All functions

DAMOCLES_ML(): Maximization of the loglikelihood under the DAMOCLES model

DAMOCLES_bootstrap(): Phylogenetic community structure hypothesis test

DAMOCLES_loglik(): Likelihood for DAMOCLES model

DAMOCLES_sim(): Simulating DAMOCLES

HERACLES_ImportanceSampling(): Importance Sampling from the HERACLES model

NWPrimates_data: Dated phylogenetic tree of the New World Primates in nexus format and presence-absence matrix for species in Manu